![]() ![]() Whether to use existing tools or custom scripts depends on many factors, including the number of samples, source(s) of data and scope of the project. A companion utility, DepthGauge, measures coverage at regions of interest to increase confidence in calls.Īvailability and implementation: Source code is freely available at and a Docker image is available at Ĭontact: data: Supplementary data are available at Bioinformatics online.Įxamination of genomic variants from multiple samples is a common procedure in bioinformatics. In addition to use in large studies with numerous samples, MuCor can also be employed to directly compare variant calls from the same sample across two or more platforms, parameters or pipelines. In response, we have written MuCor, a tool to gather variants from a variety of input formats (including multiple files per sample), perform database lookups and frequency calculations, and write many types of reports. Aggregating, sorting and summarizing variants and effects across a cohort is often done with ad hoc scripts that must be re-written for every new project. Motivation: There are many tools for variant calling and effect prediction, but little to tie together large sample groups. ![]()
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